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  • File54780
    • Project
    Experiment Type
    Assay Details
    Biosource
    File Properties
    File Type
    File Format
    File Size
    Generating Lab
    Experimental Lab
    Input of Workflow
    Output of Workflow
    Status
    2 Common Properties
     Commendations
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    Title
    Type
    Experiment Type
    Dataset
    Condition
    Assay Details
    Biosource
    File Type
    File Format
    In experiment as
    Replicate info
    Generating Lab
    Experimental Lab
    File Size
    Experiment Set
    4DNFI95UKD9I.bed.gz
    FileReference
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    Target Regions
    bed
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    Alistair Boettiger, STANFORD
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    32.52 kB
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    4DNFITQGGAX8.fasta
    FileReference
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    Oligo Sequences
    fasta
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    Alistair Boettiger, STANFORD
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    14.68 MB
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    4DNFIZCK1ZLZ.bed.gz
    FileReference
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    Target Regions
    bed
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    Alistair Boettiger, STANFORD
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    1.28 MB
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    4DNFIXT8Q9JW.csv
    FileReference
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    csv
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    Alistair Boettiger, STANFORD
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    1.09 kB
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    4DNFI28X6NLC.csv
    FileReference
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    Other
    csv
    -
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    Alistair Boettiger, STANFORD
    -
    45.47 kB
    -
    4DNFIF8577IV.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in mouse ESC-E14
    ORCA + RNA-FISH for 44 SEs 15-kb resolution
    374 genomic regions, 21 transcripts
    ES-E14TG2a
    FOF-CT - Spot Quality
    csv
    processed file
    Biorep 1, Techrep 1
    Alistair Boettiger, STANFORD
    Alistair Boettiger, STANFORD
    16.21 MB
    4DNES44GBU46
    4DNFI4YJYP5Q.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in mouse ESC-E14
    ORCA + RNA-FISH for 44 SEs 15-kb resolution
    374 genomic regions, 21 transcripts
    ES-E14TG2a
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Alistair Boettiger, STANFORD
    Alistair Boettiger, STANFORD
    11.5 MB
    4DNES44GBU46
    4DNFIJ5YBMVT.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in mouse ESC-E14
    ORCA + RNA-FISH for 44 SEs 15-kb resolution
    374 genomic regions, 21 transcripts
    ES-E14TG2a
    FOF-CT - Cell Data
    csv
    processed file
    Biorep 1, Techrep 1
    Alistair Boettiger, STANFORD
    Alistair Boettiger, STANFORD
    6.07 MB
    4DNES44GBU46
    4DNFIR22QD1Q.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in mouse ESC-E14
    ORCA for 376 SEs 15-kb resolution
    374 genomic regions
    ES-E14TG2a
    FOF-CT - Spot Quality
    csv
    processed file
    Biorep 1, Techrep 1
    Alistair Boettiger, STANFORD
    Alistair Boettiger, STANFORD
    210.01 MB
    4DNESABI2R6T
    4DNFIZRKYSZL.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in mouse ESC-E14
    ORCA for 376 SEs 15-kb resolution
    374 genomic regions
    ES-E14TG2a
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Alistair Boettiger, STANFORD
    Alistair Boettiger, STANFORD
    315.78 MB
    4DNESABI2R6T
    4DNFIX1G6E3I.bed.gz
    FileProcessed
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    Domain Calls
    bed
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    Andrew Belmont, ILLINOIS
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    3.33 kB
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    4DNFI1MC93C2.bed.gz
    FileProcessed
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    Domain Calls
    bed
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    Andrew Belmont, ILLINOIS
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    3.23 kB
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    4DNFITIZFFEI.bed.gz
    FileProcessed
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    Domain Calls
    bed
    -
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    Andrew Belmont, ILLINOIS
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    1.54 kB
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    4DNFI8VNN8T2.bed.gz
    FileProcessed
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    Domain Calls
    bed
    -
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    Andrew Belmont, ILLINOIS
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    557 Bytes
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    4DNFI7QB3QL4.bed.gz
    FileProcessed
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    Domain Calls
    bed
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    Andrew Belmont, ILLINOIS
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    1.11 kB
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    4DNFI72CYWEG.bed.gz
    FileProcessed
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    Domain Calls
    bed
    -
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    Andrew Belmont, ILLINOIS
    -
    2.58 kB
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    4DNFI1UT3QQC.bed.gz
    FileProcessed
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    Domain Calls
    bed
    -
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    Andrew Belmont, ILLINOIS
    -
    4.47 kB
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    4DNFIEDYI1VY.bed.gz
    FileProcessed
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    Domain Calls
    bed
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    -
    Andrew Belmont, ILLINOIS
    -
    1.29 kB
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    4DNFIJI7XHPW.bed.gz
    FileProcessed
    in situ Hi-C
    in situ Hi-C on hESCs differentiated toward pancreatic cells
    pancreatic precursor cells - H1
    Arima - A1, A2
    PDX1-eGFP dCAS9-KRAB H1 differentiated to endoderm of foregut
    -
    bed
    Bed file
    merged replicates
    4DN DCIC, HMS
    Danwei Huangfu, MSKCC
    42.84 kB
    4DNESOGBAIC7
    4DNFIVT37Z6Z.bw
    FileProcessed
    4C-seq
    4C-seq on mouse stem cells
    Embryonic stem cell (ESC) - Nanog
    Nanog mouse gene
    mouse embryonic stem cell
    Normalized Contact Intensities
    bw
    Postulou lab Analysis Results
    merged replicates
    Effie Apostolou, CORNELL
    Effie Apostolou, CORNELL
    171.88 kB
    4DNES7WBXU34
    4DNFISGGE1B8.bw
    FileProcessed
    4C-seq
    4C-seq on mouse stem cells
    Embryonic stem cell (ESC) - Mycn
    Mycn mouse gene
    mouse embryonic stem cell
    Normalized Contact Intensities
    bw
    Postulou lab Analysis Results
    merged replicates
    Effie Apostolou, CORNELL
    Effie Apostolou, CORNELL
    164.6 kB
    4DNESIH4PE43
    4DNFIHA4WV8A.bw
    FileProcessed
    4C-seq
    4C-seq on mouse stem cells
    Embryonic stem cell (ESC) - Gata6
    Gata6 mouse gene
    mouse embryonic stem cell
    Normalized Contact Intensities
    bw
    Postulou lab Analysis Results
    merged replicates
    Effie Apostolou, CORNELL
    Effie Apostolou, CORNELL
    162.91 kB
    4DNES64474R6
    4DNFIZ8XFP71.bw
    FileProcessed
    4C-seq
    4C-seq on mouse stem cells
    Extra embryonic stem cells (XEN) - Sox17
    Sox17 mouse gene
    extraembryonic cell
    Normalized Contact Intensities
    bw
    Postulou lab Analysis Results
    merged replicates
    Effie Apostolou, CORNELL
    Effie Apostolou, CORNELL
    158.91 kB
    4DNESNXZHUAC
    4DNFIDES2RG2.bw
    FileProcessed
    4C-seq
    4C-seq on mouse stem cells
    Extra embryonic stem cells (XEN) - Pdgfa
    Pdgfa mouse gene
    extraembryonic cell
    Normalized Contact Intensities
    bw
    Postulou lab Analysis Results
    merged replicates
    Effie Apostolou, CORNELL
    Effie Apostolou, CORNELL
    169.35 kB
    4DNESG58ZWOV
    4DNFIAWI8UN7.bw
    FileProcessed
    4C-seq
    4C-seq on mouse stem cells
    Extra embryonic stem cells (XEN) - Gata6
    Gata6 mouse gene
    extraembryonic cell
    Normalized Contact Intensities
    bw
    Postulou lab Analysis Results
    merged replicates
    Effie Apostolou, CORNELL
    Effie Apostolou, CORNELL
    162.09 kB
    4DNESJ66F9JI